PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00496.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 250aa    MW: 28962.2 Da    PI: 5.3985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00496.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT+eEd++lv++++++G  +W++ +++ g+ R++k+c++rw +yl
  Rsa1.0_00496.1_g00007.1 14 RGPWTPEEDQILVNYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61
                             89******************************99************97 PP

2Myb_DNA-binding51.72.1e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Rsa1.0_00496.1_g00007.1  67 RGNFTPQEEQTIINLHEVLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                              89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.619961IPR017930Myb domain
SuperFamilySSF466895.64E-3110108IPR009057Homeodomain-like
SMARTSM007173.0E-151363IPR001005SANT/Myb domain
PfamPF002492.9E-171461IPR001005SANT/Myb domain
CDDcd001671.43E-111661No hitNo description
PROSITE profilePS5129424.79262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2765117IPR009057Homeodomain-like
SMARTSM007174.1E-1466114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.35E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRAPCCEKM GMKRGPWTPE EDQILVNYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEQTIIN LHEVLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLNKNQ  120
NNGGDTKDIN GSNETTHEDK EPVMVHTTSP QQFSNSTTTL EISENNNKDD TMSYEDISAL  180
VDESFWSDVV SVDNASNNEK KIEGWEGLLE RNSEIYSYNN SKLYDDDMEF WFDLFSSCRR  240
IEAFSDIPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121175109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655085.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_013634924.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_013634894.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-75MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0D3C3D00.0A0A0D3C3D0_BRAOL; Uncharacterized protein
STRINGBra021708.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-162myb domain protein 14